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Protein Name Alternative Name Mass Accession Number #Peptides Matched % Coverage
14-3-3 epsilon
29174 P62258 14 41
14-3-3 eta AS1 28219 Q04917 19 30
14-3-3 gamma
28303 P61982 24 25
14-3-3 zeta/delta PKC inhibitor protein-1, KCIP-1 27745 P63104 25 35
Abl-interactor 2 ArgBP1, Abi-2, Abl binding protein 3, AblBP3, Arg binding protein 1 55664 Q9NYB9 6 11
Adaptor-related protein complex 1, mu 1 subunit Mu-adaptin 1, Adaptor protein complex AP-1 mu-1 subunit, Golgi adaptor HA1/AP1 adaptin mu-1 subunit, Clathrin assembly protein assembly protein complex 1 medium chain 1, Clathrin coat assembly protein Ap47, Clathrin coat associated protein AP47, AP-mu chain family member mu1 A 48587 Q9BXS5 6 13
Adaptor-related protein complex 3 beta 2 subunit Neuron-specific vesicle coat protein beta-NAP, Beta3B-adaptin, Adaptor protein complex AP-3 beta-2 subunit, Clathrin assembly protein complex 3 beta 2 large chain, AP-3 complex beta-2 subunit 119060 Q13367 10 10
ADP-ribosylation factor GTPase-activating protein 3 ARF GAP3, originally called ARFGAP1 56929 Q9NP61 10 13
Alpha-taxilin
61892 P40222 13 18
Annexin A1 Annexin I, Lipocortin I, calpactin II, Chromobindin 9, P35, Phospholipase A2 inhibitory protein 38715 P04083 17 28
Annexin A11 Annexin XI, Calcyclin-associated annexin 50, CAP-50, 56 kDa autoantigen 54390 P50995 7 12
Annexin A5 Annexin V, Lipocortin V, Endonexin II, Calphobindin I, CBP-I, Placental anticoagulant protein I, PAP-I, PP4, Thromboplastin inhibitor, Vascular anti-coagulant-alpha, VAC-alpha, Anchorin 35937 P08758 10 13
ARP2/3 complex 34 kDa subunit P34-ARC, Arp2/3 complex subunit 2 34333 O15144 10 21
Beta-taxilin Muscle derived protein 77, MDP77 76520 Q8N3L3 10 13
Calpain 10 CANP 10, Calcium-activated neutral proteinase 10 74939 Q9HC96 9 11
CDK5 regulatory subunit associated protein 2 CDK5 activator-binding protein C48 215099 Q96SN8 6 4
CDK5 regulatory subunit-associated protein 1 CDK5 activator-binding protein C42, CGI-05, HSPC167 67689 Q96SZ6 11 18
Centaurin beta 2 Cnt-b2 88029 Q15057 11 12
Centromere/kinetochore protein zw10 homolog
88830 O43264 11 13
Coatamer beta subunit Beta -coat protein, Beta -COP, p120 102488 P35606 10 12
Coatomer delta subunit Delta-COP, Archain 57211 P48444 8 13
Coatomer gamma subunit Gamma-coat protein, Gamma-COP 97719 Q9Y678 12 14
Conserved oligomeric Golgi complex component 2 Low density lipoprotein receptor defect C-complementing protein, COG2 83208 Q14746 8 9
Conserved oligomeric Golgi complex component 3 Vesicle docking protein SEC34 homolog, p94 94081 Q96JB2 10 10
Cytoskeleton-like bicaudal D protein homolog 1
110807 Q96G01 21 19
DEAD-box protein abstrakt DEAD-box protein 41 69838 Q9UJV9 8 11
Desmoplakin DP, 250/210 kDa paraneoplastic pemphigus antigen 331779 P15924 11 4
Diacylglycerol kinase, delta Diglyceride kinase, DGK-delta, DAG kinase delta, 130 kDa diacylglycerol kinase 132827 Q16760 13 10
Diaphanous protein homolog 1 Diaphanous-related formin 1, DRF1, Dia1 138980 O60610 21 13
Diaphanous protein homolog 2 Diaphanous-related formin 2, DRF2 125570 O60879 14 12
Dynein heavy chain, cytosolic DYHC, Cytoplasmic dynein heavy chain 1, DHC1 532412 Q14204 17 4
Dynein light intermediate chain 2, cytosolic LIC53/55, LIC-2 54100 O43237 12 12
Epilepsy holoprosencephaly candidate-1 protein EHOC-1, Transmembrane protein 1, GT334 protein, TMEM1 142190 P48553 7 6
Epimorphin Syntaxin 2 33397 P32856 12 15
ERC protein 1 ELKS protein, Rab6 interacting protein 2 128087 Q8IUD2 33 20
Exocyst complex component Sec10
81854 O00471 6 9
Exocyst complex component Sec5
104067 Q96KP1 14 13
Glutamate receptor 1 precursor GluR-1, GluR-A, GluR-K1, Glutamate receptor ionotropic, AMPA 1 101537 P42261 9 7
Glutamate receptor-interacting protein 1 GRIP1 protein 122424 Q9Y3R0 13 8
Glyceraldehyde-3-phosphate dehydrogenase GAPDH 35876 P04406 22 37
Golgi autoantigen, golgin subfamily A member 1 Golgin-97 88201 Q92805 20 14
Golgi autoantigen, golgin subfamily A member 2 Golgi matrix protein GM130, Gm130 autoantigen, Golgin-95 111659 Q08379 11 11
Golgi autoantigen, golgin subfamily A member 4 Trans-Golgi p230, 256 kDa golgin, Golgin-245 261142 Q13439 9 4
Golgi autoantigen, golgin subfamily B member 1 Giantin, Macrogolgin, Golgi complex-associated protein, 372-kDa, GCP372 376080 Q14789 15 4
Golgin 45 Basic leucine zipper nuclear factor 1, JEM-1 44939 Q9H2G9 12 19
Guanine nucleotide exchange factor DBS DBL s big sister, MCF2 transforming sequence-like protein 123985 O15068 13 9
Heat shock protein 60 Hsp60, 60 kDa chaperonin, CPN60, HSP-60, 60 kDa heat shock protein, mitochondrial precursor, Mitochondrial matrix protein P1, P60 lymphocyte protein 61055 P10809 15 23
Hermansky-Pudlak syndrome 3 protein Cocoa 113737 Q969F9 12 8
Hook homolog 1 Hook1, HK1 84649 Q9UJC3 11 11
Hook homolog2 h-hook2, HK2 83164 Q96ED9 15 18
Huntingtin interacting protein 1 HIP-1 115477 O00291 16 13
Huntingtin interacting protein 1 related Hip-1 related, Hip 12 119389 O75146 11 10
Huntingtin-associated protein 1 HAP-1, Neuroan 1 75515 P54257 11 13
Kinectin Kinesin receptor, CG-1 antigen 156277 Q86UP2 18 11
Kinesin heavy chain Ubiquitous kinesin heavy chain, UKHC 109686 P33176 22 23
Kinesin heavy chain isoform 5C Kinesin heavy chain neuron-specific 2 109496 O60282 7 9
Kinesin light chain 2 KLC2 68935 Q9H0B6 7 10
Kinesin-like protein KIF17 KIF3-related motor protein 115115 Q9P2E2 14 12
Kinesin-like protein KIF1C
123073 O43896 11 8
Kinesin-like protein KIF2 Kinesin-2 76928 O00139 8 9
Kinesin-like protein KIF3A Microtubule plus end-directed kinesin motor 3A 80386 Q9Y496 13 16
Kinesin-like protein KIF3B Microtubule plus end-directed kinesin motor 3B, HH0048 85126 O15066 13 14
Kinesin-like protein KIF3C
89455 O14782 13 14
Kinesin-like protein KIFC3
77868 Q9BVG8 9 12
Lysosomeal trafficking regulator Beige homolog, LYST 429129 Q99698 9 2
MAP/microtubule affinity-regulating kinase 4 MAP/microtubule affinity-regulating kinase like 1, MAP4 82520 Q96L34 12 14
MKLP-1 Kinesin-like potein 5, Kinesin-like protein KIF23, Mitotic kinesin-like protein-1 98106 Q02241 15 11
Myosin Va Myosin 5A, Dilute myosin heavy chain, non-muscle, Myosin heavy chain 12, Myoxin 215423 Q9Y4I1 7 4
Myosin Vc Myosin 5C 202796 Q9NQX4 6 3
Myosin VI
148715 Q9UM54 16 10
Peripherin
53879 P41219 7 15
Programmed cell death 6-interacting protein PDCD6-interacting protein, ALG-2 interacting protein 1, Hp95, AIP1 96024 Q8WUM4 11 12
Protein kinase C, epsilon type PKC-epsilon 83675 Q02156 9 11
Protein phosphatase 1 regulatory subunit 12B Myosin phosphatase targeting subunit 2, Myosin phosphatase target subunit 2 110419 O60237 16 13
Rab effector MyRIP Myosin- VIIa- and Rab-interacting protein, Exophilin-8, Slp homolog lacking C2 domains-cslp
95721 Q8NFW9 9 9
Rab GDP dissociation inhibitor beta Rab GDI beta, GDI-2 50664 P50395 6 14
Rab-2A
23546 P61019 9 18
Rab-2B
24215 Q8WUD1 8 23
Rab-34 Rab-39, Ras-related protein Rah 29045 Q9BZG1 12 25
Rab-6 Rab-6A 23593 P20340 8 30
Rab5 GDP/GTP exchange factor Rabex-5 79372 Q9UJ41 12 9
Rab6-interacting protein 1 RabIP1 147096 Q6IQ26 11 9
Rac-beta serine/threonine-protein kinase RAC-PK-beta, Protein kinase Akt-2, Protein kinase B, beta, PKB beta 55769 P31751 8 12
Rho-associated protein kinase 1 Rho-associated, coiled-coil containing protein kinase 1, p160 ROCK-1, p160ROCK 158176 Q13464 13 8
Secretogranin III precursor SgIII, UNQ2502/PRO5990 53006 Q8WXD2 7 13
Serine/threonine-protein kinase PCTAIRE-1
55716 Q00536 7 10
Serine/threonine-protein kinase PCTAIRE-2
59665 Q00537 11 15
Sorting nexin 25 MSTP043 62670 Q9H3E2 8 11
Sorting nexin 27
50880 Q96L92 8 19
Sorting nexin 8
52570 Q9Y5X2 7 13
Spectrin alpha chain, brain Spectrin, non-erythroid alpha chain, Alpha-II spectrin, Fodrin alpha chain 284530 Q13813 11 4
Spectrin beta chain, brain 3 Spectrin, non-erythroid beta chain 3, Beta-IV spectrin 288988 Q9H254 10 3
stress-70 protein, mitochondrial precursor 75 kDa glucose regulated protein, GRP 75, Peptide-binding protein 74, PBP74, Mortalin, MOT 73681 P38646 8 12
Synaptotagmin-7 Synaptotagmin VII, SytVII 45568 O43581 11 17
Synaptotagmin-like protein 2 Exophilin 4, Slp2 100797 Q9HCH5 12 10
Syntaxin binding protein 2 Unc-18 homolog 2, Unc-18B, Unc18-2 66439 Q15833 9 13
Syntaxin binding protein 3 Unc-18 homolog 3, Unc-18C, Unc-18-3, Platelet Sec1, PSP 67575 O00186 7 11
Syntaxin-18
38674 Q9P2W9 10 14
Syntaxin-7
29816 O15400 6 21
TATA element modulatory factor TMF, ARA160 123172 P82094 18 10
TBC1 domain family member 1
133085 Q86TI0 16 11
TBC1 domain family member 3 Rab-Gap for Rab5, TRE17 alpha protein, Prostate cancer gene 17 protein, Rab GTPase-activating protein PRC17 62169 Q8IZP1 6 12
Thyroid receptor interacting protein 11 TRIP-11, Golgi-associated microtubule-binding protein 210, Trip230, Clonal evolution related gene on chromosome 14, GMAP-210 227641 Q15643 6 3
Trafficking protein particle complex subunit 4 Synbindin, Mematopoietic stem/progenitor cell protein 172. HSPC172, CGI-104, TRS23 homolog 24340 Q9Y296 10 28
Tumor susceptibility gene 101 protein TSG101 43945 Q99816 13 15
Tyrosine-protein phosphatase, non-receptor type 13 Protein-tyrosine phosphatase 1E, PTP-E1, PTPE1, PTP-BAS, Protein-tyrosine phosphatase PTPL, Fas-associated protein-tyrosine phosphatase 1, FAP-1 276908 Q12923 11 4
Vacuolar ATP synthase catalytic subunit A, osteoclast isoform V-ATPase A subunit 2, Vacuolar proton pump alpha subunit 2, V-ATPase 69 kDa subunits 2, Isoform HO68 68178 P38607 7 12
Vacuolar ATP synthase catalytic subunit A, ubiquitous isoform V-ATPase A subunit 1, Vacuolar proton pump alpha subunit 1, V-ATPase 69 kDa subunit 1, Isoform VA68 68305 P38606 6 8
Vacuolar protein sorting 11 VPS11, RING finger protein 108, PP3476 107838 Q9H270 12 12
Vacuolar protein sorting 13A Chorein, Chorea-acanthocytosis protein 360307 Q96RL7 8 2
Vacuolar protein sorting 35 Vesicle protein sorting 35, VPS35, Maternal-embryonic 3 91708 Q96QK1 8 8
Vesicular-fusion protein NSF Vesicle-fusing ATPase, N-ethylmaleimide sensitive fusion protein, NEM-sensitive fusion protein 82655 P46459 13 13

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