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Protein Name Alternative Name Mass Accession Number #Peptides Matched % Coverage
72 kDa type IV collagenase precursor 72 kDa gelatinase, Matrix metalloproteinase-2, MMP-2, Gelatinase A, TBE-1 73883 P08253 7 13
Actin-binding LIM protein 1 abLIM-1, LIMAB1, Limatin, Actin-binding double-zinc-finger protein, Actin-binding LIM protein family member 1 87645 O14639 15 14
Alpha-taxilin
61892 P40222 13 18
Amyotrophic lateral sclerosis 2 chromosome region candidate gene protein 19 Partitioning-defective 3-like protein, PAR3-L protein, PAR3-beta, PAR-3 like 132496 Q8TEW8 10 8
Angiopoietin-related protein 3 precursor Angiopoietin-like 3, Angiopoietin-5, ANG-5, UNQ153/PRO179 53638 Q9Y5C1 8 12
ARP2/3 complex 34 kDa subunit P34-ARC, Arp2/3 complex subunit 2 34333 O15144 10 21
Basic fibroblast growth factor receptor 1 precursor FGFR-1, bFGF-R, Fms-like tyrosine kinase-2, c-fgr 91869 P11362 10 11
Beta enolase Enolase 3, 2-phospho-D-glycerate hydro-lyase 46987 P13929 13 17
Beta-taxilin Muscle derived protein 77, MDP77 76520 Q8N3L3 10 13
Bone morphogenetic protein 6 precursor BMP-6 57226 P22004 5 10
Collagen alpha 1 (XIX) chain precursor Collagen alpha 1(Y) chain 115449 Q14993 14 10
Collagen alpha 1 (XV) chain precursor Endostatin 141932 P39059 11 9
Contactin 3 precursor Brain-derived immunoglobulin superfamily protein 1, BIG-1, Plasmactoma-associated neuonal glycoprotein 112840 Q9P232 13 10
Cullin homolog 3 CUL-3 88931 Q13618 14 14
CYR61 protein precursor Insulin-like growth factor-binding protein 10, Cysteine-rich, angiogenic inducer, 61, GIG1 protein 42027 O00622 13 17
Disheveled associated activator of morphogenesis 1 DAAM1 123475 Q9Y4D1 17 12
Dishevelled associated activator of morphogenesis 2 DAAM2 123560 Q86T65 10 7
Dual-specificity tyrosine-phosphorylation regulated kinase 2
59715 Q92630 6 10
EMILIN 1 precursor Elastin microfibril interface-located protein 1, Elastin microfibril interfacer 1 106696 Q9Y6C2 12 10
EMILIN 2 precursor Elastin microfibril interface-located protein 2, Elastin microfibril interfacer 2 115617 Q9BXX0 11 9
EMILIN-4 Endothelial cell multimerin 1, Multimerin 1 precursor, Elastin microfibril interface located protein 4, Elastin microfibril interfacer 4 138073 Q13201 12 9
Epimorphin Syntaxin 2 33397 P32856 12 15
Exocyst complex component Sec10
81854 O00471 6 9
F-Box/WD-repeat protein 7 Cdc4, Archipelago homolog, Ago, SEL-10, F-box protein FBX30 79664 Q969H0 7 9
Fibroblast growth factor receptor 2 precursor FGFR-2, Keratinocyte growth factor receptor 2 92026 P21802 8 7
Fibroblast growth factor-3 FGF-3, Int-2 proto-oncogene protein precursor 26887 P11487 9 23
Fibroblast growth factor-4 precursor FGF-4, Heparin secretory transforming protein, HST-1, Transforming protein KS3, HBGF-4 22048 P08620 8 20
Flightless-I protein homolog
144752 Q13045 16 12
Glomulin FKBP-associated protein, FK506-binding protein-associated protein, FAP 68209 Q92990 7 11
HIRA protein TUP1 like enhancer of split protein 1 111837 P54198 12 9
Homeobox protein CHX10 Ceh-10 homeodomain containing homolog 39411 P58304 10 22
Hyaluronan mediated motility receptor Intracellular hyaluronic acid binding protein, Receptor for hyaluronan-mediated motility, CD168 antigen, RHAMM 84032 O75330 14 17
Inner nuclear membrane protein Man1 LEM domain containing protein 3 99998 Q9Y2U8 10 7
Integrin beta-5 precursor
88055 P18084 8 7
Intercellular adhesion molecule-4 precursor ICAM-4, Landsteiner-Wiener blood group glycoprotein, LW blood group protein, CD242 antigen 29266 Q14773 5 16
Jumonji protein Jumonji/ARID domain-containing protein 2 141698 Q92833 19 9
Keratocan precursor KTN, Keratan sulfate proteoglycan keratocan 40509 O60938 11 19
Kinesin-like protein KIF3A Microtubule plus end-directed kinesin motor 3A 80386 Q9Y496 13 16
Kinesin-like protein KIF3B Microtubule plus end-directed kinesin motor 3B, HH0048 85126 O15066 13 14
Kinesin-like protein KIF3C
89455 O14782 13 14
Laminin beta-3 chain precursor Laminin 5 beta 3, Laminin B 1k chain, Kalinin B1 chain 129574 Q13751 16 13
Laminin gamma-2 chain precursor Kalinin/nicein/epiligrin 100 kDa subunit. Laminin B2t chain, Cell-scattering factor 140 kDa subunit, CSF 140 kD subunit, Large adhesive scatter factor 140 kDa subunit, Ladsin 140 kDa subunit 130991 Q13753 12 9
Limbic system-assoicated membrane protein precursor LSAMP 37309 Q13449 11 10
Limbin EVC2 147950 Q86UK5 17 8
Low-density lipoprotein receptor-related protein 1 precursor LRP1, Alpha-2-macroglobulin receptor, A2MR, APOER, CD91, Apolipoprotein E receptor 242359 Q07954 8 1
Low-density lipoprotein receptor-related protein 2 precursor Megalin, Glycoprotein 330, gp330 521936 P98164 9 1
Moesin Membrane-organizing extension spike protein 67821 P26038 7 9
Myelin P0 protein precursor Myelin peripheral protein, MPP 27555 P25189 7 17
Myristiylated alanine-rich C-kinase substrate MARCKS, Protein kinase C substrate, 80 kDa protein, light chain, PKCSL, 80K-L 31545 P29966 7 12
Neuronal cell adhesion molecule precursor Nr-CAM, NfCAM-related cell adhesion molecule, Ng-CAM-related, hBravo 143895 Q92823 10 5
Neurotrimin precursor NT, UNQ297/PRO337 37972 Q9P121 12 9
Partitioning defective-6 homolog gamma PAR-6 gamma, PAR6D 40084 Q9BYG4 5 17
Polycystin 1 precursor Autosomal dominant polycystic kidney disease protein 1, PDK1 462572 P98161 8 2
Polypeptide N-acetylgalactosaminyltransferase 5 Protein-UDP acetylgalactosaminyltransferase 5, UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 5, Polypeptide GalNAc transferase 5, GalNAc-T5, pp-GaNTase 5 106267 Q7Z7M9 13 11
Protein kinase C, delta type PKC-delta 77478 Q05655 12 13
Protein pM5 precursor Nodal modulator 1 precursor, Nomo 134295 Q15155 11 8
Protocadherin 16 precursor Dachsous 1. Cadherin-19, Fibroblast cadherin 1 346184 Q96JQ0 6 1
Protocadherin 18 precursor
125309 Q9HCL0 13 8
Protocadherin 7 precursor Brain-heart protocadherin, BH-Pcdh 116106 O60245 9 7
Protocadherin gamma A5 precursor PCDH-gamma-A5 100936 Q9Y5G8 9 7
Ras GTPase-activating protein SynGAP Synaptic Ras-GTPase-activating protein 1, Synaptic Ras-GAP 1, Neuronal RasGAP 146677 Q96PV0 11 7
Rho-GTPase-activating protein 7 Rho-type GTPase-activating protein 7, Deleted in liver cancer 1 protein, Dlc-1, HP protein, StAR-related lipid transfer protein 12, StARD12, START domain-containgin protein 12, ARHGAP7 122860 Q96QB1 13 10
Semaphorin 3C precursor Semaphorin E, Sema E 85208 Q99985 10 9
Semaphorin 3F precursor Semaphorin IV, Sema IV, Sema III/F 88382 Q13275 8 9
Semaphorin 6A precursor Semaphorin VIA, Semaphorin 6A-1, SEMA6A-1 114370 Q9H2E6 13 8
Serine-protein kinase ATM Ataxia, telangiectasia mutated, A-T, mutated 350648 Q13315 11 3
Short stature homeobox protein Pseudoautosomal homeobox containing osteogenic protein 32237 O15266 8 23
SLIT-ROBO Rho GTPase activating protein 3 srGAP3, WAVE-associated Rac GTPase actiating protein, Mental disorder-associated GAP, Rho-GTPase-activating protein 14 124505 O43295 15 12
Spectrin alpha chain, erythrocye Erythroid alpha-spectrin 279919 P02549 9 4
Syndecan-2 precursor Fibroglycan, Heparan sulfate proteoglycan core protein, HSPG, SYND2 22174 P34741 8 16
T-box transcription factor TBX1 T-box protein 1, Testis-specific T-box protein 43133 O43435 14 21
T-box transcription factor TBX15
58309 Q96SF7 8 15
Tenascin N precursor
143446 Q9UQP3 13 7
Thrombospondin 1 precursor
129414 P07996 9 6
Vascular endothelial growth factor receptor 1 precursor VEGFR-1, Vascular permeability factor receptor, Tyrosine-protein kinase receptor FLT, Flt-1, Tyrosine-protein kinase FRT, Fms-like tyrosine kinase 1 150736 P17948 13 6
Vascular endothelial growth factor receptor 3 precursor VEGFR-3, Tyrosine-protein kinase receptor FLT4 145600 P35916 10 5
Wnt-3a protein precursor
39365 P56704 7 11
Wnt-8a protein precursor Wnt-8d 39527 Q9H1J5 5 11

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